NGSeasy Sample Report

Author: ${FirstName} ${LastName} Email: ${NGSUSER} Date: date NGSeasy Version: ${NGSEASYVERSION}


Project

Project: ${PROJECT_ID} Sample: ${SAMPLE_ID} Location: ${PROJECT_DIR} Config File: ${config_tsv}


Raw Fastq Files

Location

PE Illumina Platform Unit Quality Type

${FQ1} ${FQ2}

URL to FASTQC Report

QC Report

Trimmomatic version fastx version

summary of commands

R1 ${NUMREADS1} ${NQCR1} R2 ${NUMREADS2} ${NQCR2}

URL to FASTQC Report


Alignment Report


Variant Report


Annotation Report


Log Files